Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models.

Hani Z. Girgis

Alfredo Velasco II Benjamin T. James Vincent D. Wells Hani Z. Girgis Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models. 380-387 2020 36 Bioinform. 2 https://doi.org/10.1093/bioinformatics/btz551 https://www.wikidata.org/entity/Q91740035 db/journals/bioinformatics/bioinformatics36.html#VelascoJWG20

Brian B. Luczak Benjamin T. James Hani Z. Girgis A survey and evaluations of histogram-based statistics in alignment-free sequence comparison. 1222-1237 2019 20 Briefings Bioinform. 4 https://doi.org/10.1093/bib/bbx161 https://www.wikidata.org/entity/Q47302666 db/journals/bib/bib20.html#LuczakJG19

Hani Z. Girgis Alfredo Velasco II Zachary E. Reyes HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures. 310:1-310:18 2018 19 BMC Bioinform. 1 https://doi.org/10.1186/s12859-018-2312-1 https://www.wikidata.org/entity/Q58768540 db/journals/bmcbi/bmcbi19.html#GirgisVR18

Hani Z. Girgis Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale. 227:1-227:19 2015 16 BMC Bioinform. https://doi.org/10.1186/s12859-015-0654-5 https://www.wikidata.org/entity/Q35709715 db/journals/bmcbi/bmcbi16.html#Girgis15

Hani Z. Girgis Ivan Ovcharenko Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs. 25 2012 13 BMC Bioinform. https://doi.org/10.1186/1471-2105-13-25 https://www.wikidata.org/entity/Q34152959 db/journals/bmcbi/bmcbi13.html#GirgisO12

Hani Z. Girgis Benjamin R. Mitchell Themistocles Dassopoulos Gerard Mullin Gregory D. Hager An intelligent system to detect Crohn's disease inflammation in wireless capsule endoscopy videos. 1373-1376 2010 ISBI https://doi.org/10.1109/ISBI.2010.5490253 conf/isbi/2010 db/conf/isbi/isbi2010.html#GirgisMDMH10 Sharmishtaa Seshamani Purnima Rajan Rajesh Kumar 0001 Hani Z. Girgis Themos Dassopoulos Gerard Mullin Gregory D. Hager A Meta Registration Framework for Lesion Matching. 582-589 2009 MICCAI (1) https://doi.org/10.1007/978-3-642-04268-3_72 https://www.wikidata.org/entity/Q84123306 conf/miccai/2009-1 db/conf/miccai/miccai2009-1.html#SeshamaniRKGDMH09

Hani Z. Girgis Bharat Jayaraman JavaTA: A Logic-based Debugger for Java http://arxiv.org/abs/cs/0701107 2007 CoRR abs/cs/0701107 db/journals/corr/corr0701.html#abs-cs-0701107

Hani Z. Girgis Bharat Jayaraman Paul V. Gestwicki Visualizing errors in object oriented programs. 156-157 2005 conf/oopsla/2005c OOPSLA Companion https://doi.org/10.1145/1094855.1094911 https://www.wikidata.org/entity/Q130955248 db/conf/oopsla/oopsla2005c.html#GirgisJG05 Themistocles DassopoulosThemos Dassopoulos Paul V. Gestwicki Gregory D. Hager Benjamin T. James Bharat Jayaraman Rajesh Kumar 0001 Brian B. Luczak Benjamin R. Mitchell Gerard Mullin Ivan Ovcharenko Purnima Rajan Zachary E. Reyes Sharmishtaa Seshamani Alfredo Velasco II Vincent D. Wells