Shape in Medical Imaging - International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings

Gijs Luijten Christian Wachinger Gijs Luijten Shireen Y. Elhabian Karthik Gopinath Jan Egger Shape in Medical Imaging - International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings ShapeMI@MICCAI Springer 2026 Lecture Notes in Computer Science 16171 978-3-032-06773-9 978-3-032-06774-6 https://doi.org/10.1007/978-3-032-06774-6 db/conf/miccai/shapemi2025.html

Nikoo Moradi Gijs Luijten Behrus Hinrichs-Puladi Jens Kleesiek Victor Alves Jan Egger André Ferreira VS-DDPM: Efficient Low-Cost Diffusion Model for Medical Modality Translation. 2026 April abs/2604.22942 CoRR https://doi.org/10.48550/arXiv.2604.22942 db/journals/corr/corr2604.html#abs-2604-22942 streams/journals/corr

Gijs Luijten Lisle Faray de Paiva Sebastian Krüger Alexander Brost Laura Mazilescu Ana Sofia Ferreira Santos Peter Hoyer Jens Kleesiek Sophia Marie-Therese Schmitz Ulf Peter Neumann Jan Egger From screen to space: evaluating Siemens' Cinematic Reality application for medical imaging on the Apple Vision Pro. 2025 6 Frontiers Virtual Real. https://doi.org/10.3389/frvir.2025.1666614 db/journals/frvir/frvir6.html#LuijtenPKBMSHKSNE25 streams/journals/frvir

Yosra Magdi Mekki Gijs Luijten Elisabet Hagert Sirajeddin Belkhair Chris Varghese Junaid Qadir 0001 Barry Solaiman Muhammad Bilal 0005 Jaghtar Dhanda Jan Egger Jun Deng Vikas Khanduja Alejandro F. Frangi Susu M. Zughaier Mitchell A. Stotland Digital twins for the era of personalized surgery. 2025 8 npj Digit. Medicine 1 https://doi.org/10.1038/s41746-025-01575-5 db/journals/npjdm/npjdm8.html#MekkiLHBVQSBDEDKFZS25 streams/journals/npjdm

André Ferreira Gijs Luijten Behrus Hinrichs-Puladi Jens Kleesiek Victor Alves Jan Egger Achieving Over 10 ˟ Faster Sample Generation with Conditional Denoising Diffusion. BraTS-Lighthouse/AIMS-TBI@MICCAI (2) 2025 123-132 conf/miccai/2025brats-2 https://doi.org/10.1007/978-3-032-16370-7_11 db/conf/miccai/brats2025-2.html#FerreiraLHKAE25 streams/conf/miccai Christian Wachinger Beatriz Paniagua Shireen Y. Elhabian Gijs Luijten Jan Egger Shape in Medical Imaging - International Workshop, ShapeMI 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 6, 2024, Proceedings ShapeMI@MICCAI Springer 2025 Lecture Notes in Computer Science 15275 978-3-031-75290-2 978-3-031-75291-9 https://doi.org/10.1007/978-3-031-75291-9 db/conf/miccai/shapemi2024.html

Lisle Faray de Paiva Gijs Luijten Ana Sofia Ferreira Santos Moon S. Kim 0002 Behrus Puladi Jens Kleesiek Jan Egger Beyond the Desktop: XR-Driven Segmentation with Meta Quest 3 and MX Ink. 2025 June abs/2506.04858 CoRR https://doi.org/10.48550/arXiv.2506.04858 db/journals/corr/corr2506.html#abs-2506-04858 streams/journals/corr

Gijs Luijten Lisle Faray de Paiva Sebastian Krüger Alexander Brost Laura Mazilescu Ana Sofia Ferreira Santos Peter Hoyer Jens Kleesiek Sophia Marie-Therese Schmitz Ulf Peter Neumann Jan Egger From Screen to Space: Evaluating Siemens' Cinematic Reality. 2025 June abs/2506.04972 CoRR https://doi.org/10.48550/arXiv.2506.04972 db/journals/corr/corr2506.html#abs-2506-04972 streams/journals/corr

Gijs Luijten Roberto Maria Scardigno Lisle Faray de Paiva Peter Hoyer Jens Kleesiek Domenico Buongiorno Vitoantonio Bevilacqua Jan Egger Deep Learning-Based Semantic Segmentation for Real-Time Kidney Imaging and Measurements with Augmented Reality-Assisted Ultrasound. 2025 June abs/2506.23721 CoRR https://doi.org/10.48550/arXiv.2506.23721 db/journals/corr/corr2506.html#abs-2506-23721 streams/journals/corr

Markus Perz Gijs Luijten Jens Kleesiek Dieter Schmalstieg Jan Egger Christina Gsaxner MultiAR: A Multi-User Augmented Reality Platform for Biomedical Education. 1-7 2024 EMBC https://doi.org/10.1109/EMBC53108.2024.10782948 conf/embc/2024 db/conf/embc/embc2024.html#PerzLKSEG24 André Ferreira Gijs Luijten Behrus Puladi Jens Kleesiek Victor Alves Jan Egger Generalisation of Segmentation Using Generative Adversarial Networks. 1-4 2024 ISBI https://doi.org/10.1109/ISBI56570.2024.10635839 conf/isbi/2024 db/conf/isbi/isbi2024.html#FerreiraLPKAE24 streams/conf/isbi Timo Van Meegdenburg Gijs Luijten Jens Kleesiek Behrus Puladi André Ferreira Jan Egger Christina Gsaxner A Baseline Solution for the ISBI 2024 Dreaming Challenge. 1-3 2024 ISBI https://doi.org/10.1109/ISBI56570.2024.10635337 conf/isbi/2024 db/conf/isbi/isbi2024.html#MeegdenburgLKPFEG24 streams/conf/isbi Nikoo Moradi André Ferreira Behrus Puladi Jens Kleesiek Emad Fatemizadeh Gijs Luijten Victor Alves Jan Egger Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-Guided Radiotherapy. 136-153 2024 HNTS-MRG@MICCAI https://doi.org/10.1007/978-3-031-83274-1_10 conf/miccai/2024hntsmrg db/conf/miccai/hntsmrg2024.html#MoradiFPKFLAE24 streams/conf/miccai Christina Gsaxner Timo Van Meegdenburg Gijs Luijten Viet Duc Vu Behrus Puladi Jan Egger DREAMING - Diminished Reality for Emerging Applications in Medicine through Inpainting Dataset. 2024 January https://doi.org/10.5281/zenodo.10471365 Zenodo streams/repo/zenodo data/11/GsaxnerMLVPE24c Christina Gsaxner Timo Van Meegdenburg Gijs Luijten Viet Duc Vu Behrus Puladi Jan Egger DREAMING - Diminished Reality for Emerging Applications in Medicine through Inpainting Dataset. 2024 January https://doi.org/10.5281/zenodo.10548114 Zenodo streams/repo/zenodo data/11/GsaxnerMLVPE24c Christina Gsaxner Timo Van Meegdenburg Gijs Luijten Viet Duc Vu Behrus Puladi Jan Egger DREAMING - Diminished Reality for Emerging Applications in Medicine through Inpainting Dataset. 2024 January https://doi.org/10.5281/zenodo.10570773 Zenodo streams/repo/zenodo data/11/GsaxnerMLVPE24c

Ana Carolina Alves André Ferreira Gijs Luijten Jens Kleesiek Behrus Puladi Jan Egger Victor Alves Deep PCCT: Photon Counting Computed Tomography Deep Learning Applications Review. 2024 abs/2402.04301 CoRR https://doi.org/10.48550/arXiv.2402.04301 db/journals/corr/corr2402.html#abs-2402-04301

Lukas Heine Fabian Hörst Jana Fragemann Gijs Luijten Miriam Balzer Jan Egger Fin Hendrik Bahnsen M. Saquib Sarfraz Jens Kleesiek Constantin Seibold Spacewalker: Traversing Representation Spaces for Fast Interactive Exploration and Annotation of Unstructured Data. 2024 abs/2409.16793 CoRR https://doi.org/10.48550/arXiv.2409.16793 db/journals/corr/corr2409.html#abs-2409-16793 streams/journals/corr

André Ferreira Gijs Luijten Behrus Puladi Jens Kleesiek Victor Alves Jan Egger Brain Tumour Removing and Missing Modality Generation using 3D WDM. 2024 abs/2411.04630 CoRR https://doi.org/10.48550/arXiv.2411.04630 db/journals/corr/corr2411.html#abs-2411-04630 streams/journals/corr

Nikoo Moradi André Ferreira Behrus Puladi Jens Kleesiek Emad Fatemizadeh Gijs Luijten Victor Alves Jan Egger Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-guided Radiotherapy. 2024 abs/2411.14752 CoRR https://doi.org/10.48550/arXiv.2411.14752 db/journals/corr/corr2411.html#abs-2411-14752 streams/journals/corr

Jun Ma 0016 Feifei Li 0010 Sumin Kim Reza Asakereh Bao-Hiep Le Dang-Khoa Nguyen-Vu Alexander Pfefferle Muxin Wei Ruochen Gao Donghang Lyu Songxiao Yang Lennart Purucker Zdravko Marinov Marius Staring Haisheng Lu Thuy Thanh Dao Xincheng Ye Zhi Li Gianluca Brugnara Philipp Vollmuth Martha Foltyn-Dumitru Jaeyoung Cho Mustafa A. Mahmutoglu Martin Bendszus Irada Pflüger Aditya Rastogi Dong Ni 0001 Xin Yang 0009 Guang-Quan Zhou Kaini Wang Nicholas Heller Nikolaos Papanikolopoulos Christopher J. Weight Yubing Tong Jayaram K. Udupa Patrick J. Cahill Yaqi Wang 0002 Yifan Zhang Francisco Contijoch Elliot R. McVeigh Xin Ye 0006 Shucheng He Robert Haase 0002 Thomas Pinetz Alexander Radbruch Inga Krause Erich Kobler Jian He Yucheng Tang Haichun Yang Yuankai Huo Gongning Luo Kaisar Kushibar Jandos Amankulov Dias Toleshbayev Amangeldi Mukhamejan Jan Egger Antonio Pepe 0003 Christina Gsaxner Gijs Luijten Shohei Fujita Tomohiro Kikuchi Benedikt Wiestler Jan S. Kirschke Ezequiel de la Rosa Federico Bolelli Luca Lumetti Costantino Grana Kunpeng Xie Guomin Wu Behrus Puladi Carlos Martín-Isla Karim Lekadir Víctor M. Campello Wei Shao 0008 Wayne Brisbane Hongxu Jiang Hao Wei Wu Yuan 0001 Shuangle Li Yuyin Zhou Bo Wang 0044 Efficient MedSAMs: Segment Anything in Medical Images on Laptop. 2024 abs/2412.16085 CoRR https://doi.org/10.48550/arXiv.2412.16085 db/journals/corr/corr2412.html#abs-2412-16085 streams/journals/corr

Jianning Li 0002 Antonio Pepe 0003 Gijs Luijten Christina Schwarz-Gsaxner Jens Kleesiek Jan Egger Anatomy Completor: A Multi-class Completion Framework for 3D Anatomy Reconstruction. 1-14 2023 ShapeMI@MICCAI https://doi.org/10.1007/978-3-031-46914-5_1 conf/miccai/2023shapemi db/conf/miccai/shapemi2023.html#LiPLSKE23 Gijs Luijten Christina Gsaxner Jianning Li 0002 Antonio Pepe 0003 Narmada Ambigapathy Moon Kim 0002 Xiaojun Chen 0003 Jens Kleesiek Frank Hölzle Behrus Puladi Jan Egger 3D-COSI ~ 3D Collection of Surgical Instruments. 2023 October https://doi.org/10.5281/zenodo.8379918 Zenodo streams/repo/zenodo data/10/LuijtenGLPAKCKHPE23b Gijs Luijten Christina Gsaxner Jianning Li 0002 Antonio Pepe 0003 Narmada Ambigapathy Moon Kim 0002 Xiaojun Chen 0003 Jens Kleesiek Frank Hölzle Behrus Puladi Jan Egger 3D-COSI ~ 3D Collection of Surgical Instruments. 2023 October https://doi.org/10.5281/zenodo.10091715 Zenodo streams/repo/zenodo data/10/LuijtenGLPAKCKHPE23b

Jianning Li 0002 Antonio Pepe 0003 Christina Gsaxner Gijs Luijten Yuan Jin Narmada Ambigapathy Enrico Nasca Naida Solak Gian Marco Melito Afaque R. Memon Xiaojun Chen 0003 Jan Stefan Kirschke Ezequiel de la Rosa Patrick Ferdinand Christ Hongwei Bran Li David G. Ellis Michele R. Aizenberg Sergios Gatidis Thomas Küstner Nadya Shusharina Nicholas Heller Vincent Andrearczyk Adrien Depeursinge Mathieu Hatt Anjany Sekuboyina Maximilian Löffler Hans Liebl Reuben Dorent Tom Vercauteren Jonathan Shapey Aaron Kujawa Stefan Cornelissen Patrick Langenhuizen Achraf Ben-Hamadou Ahmed Rekik Sergi Pujades Edmond Boyer Federico Bolelli Costantino Grana Luca Lumetti Hamidreza Salehi Jun Ma 0016 Yao Zhang 0010 Ramtin Gharleghi Susann Beier Arcot Sowmya Eduardo A. Garza-Villarreal Thania Balducci et al. MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. 2023 abs/2308.16139 CoRR https://doi.org/10.48550/arXiv.2308.16139 db/journals/corr/corr2308.html#abs-2308-16139

Michele R. Aizenberg et al. Ana Carolina Alves Victor Alves Jandos Amankulov Narmada Ambigapathy Vincent Andrearczyk Reza Asakereh Fin Hendrik Bahnsen Thania Balducci Miriam Balzer Susann Beier Sirajeddin Belkhair Achraf Ben-Hamadou Martin Bendszus Vitoantonio Bevilacqua Muhammad Bilal 0005 Federico Bolelli Edmond Boyer Wayne Brisbane Alexander Brost Gianluca Brugnara Domenico Buongiorno Patrick J. Cahill Víctor M. Campello Xiaojun Chen 0003 Jaeyoung Cho Patrick Ferdinand Christ Francisco Contijoch Stefan Cornelissen Thuy Thanh Dao Jun Deng Adrien Depeursinge Jaghtar Dhanda Reuben Dorent Jan Egger Shireen Y. Elhabian David Gage EllisDavid G. Ellis Emad Fatemizadeh André Ferreira Martha Foltyn-Dumitru Jana Fragemann Alejandro F. Frangi Shohei Fujita Ruochen Gao Eduardo A. Garza-Villarreal Sergios Gatidis Ramtin Gharleghi Karthik Gopinath Costantino Grana Robert Haase 0002 Elisabet Hagert Mathieu Hatt Jian He Shucheng He Lukas Heine Nicholas Heller Behrus Hinrichs-Puladi Frank Hölzle Fabian Hörst Peter Hoyer Yuankai Huo Hongxu Jiang Yuan Jin Vikas Khanduja Tomohiro Kikuchi Moon S. Kim 0002Moon Kim 0002 Sumin Kim Jan KirschkeJan S. KirschkeJan Stefan Kirschke Jens Kleesiek Erich Kobler Inga Krause Sebastian Krüger Aaron Kujawa Kaisar Kushibar Thomas KustnerThomas Küstner Patrick Langenhuizen Bao-Hiep Le Karim Lekadir Feifei Li 0010 Hongwei Li 0004Hongwei Bran Li Jianning Li 0002 Shuangle Li Zhi Li Hans Liebl Maximilian Löffler Haisheng Lu Luca Lumetti Gongning Luo Donghang Lyu Jun Ma 0016 Mustafa A. Mahmutoglu Zdravko Marinov Carlos Martín-Isla Laura Mazilescu Elliot R. McVeigh Timo Van Meegdenburg Yosra Magdi Mekki Gian Marco Melito Afaque R. Memon Nikoo Moradi Amangeldi Mukhamejan Enrico Nasca Ulf Peter Neumann Dang-Khoa Nguyen-Vu Dong Ni 0001 Lisle Faray de Paiva Beatriz Paniagua Nikolaos Papanikolopoulos Antonio Pepe 0003 Markus Perz Alexander Pfefferle Irada Pflüger Thomas Pinetz Sergi Pujades Behrus Puladi Lennart Purucker Junaid Qadir 0001 Alexander Radbruch Aditya Rastogi Ahmed Rekik Ezequiel de la Rosa Hamidreza Salehi Ana Sofia Ferreira Santos M. Saquib Sarfraz Roberto Maria Scardigno Dieter Schmalstieg Sophia Marie-Therese Schmitz Christina Schwarz-GsaxnerChristina Gsaxner Constantin Seibold Anjany Sekuboyina Wei Shao 0008 Jonathan Shapey Nadya Shusharina Barry Solaiman Naida Solak Arcot Sowmya Marius Staring Mitchell StotlandMitchell A. Stotland Yucheng Tang Dias Toleshbayev Yubing Tong Jayaram K. Udupa Chris Varghese Tom Vercauteren Philipp Vollmuth Viet Duc Vu Christian Wachinger Bo Wang 0044 Kai-Ni WangKaini Wang Yaqi Wang 0002 Hao Wei Muxin Wei Christopher J. Weight Benedikt Wiestler Guomin Wu Kunpeng Xie Haichun Yang Songxiao Yang Xin Yang 0009 Xin Ye 0006 Xincheng Ye Wu Yuan 0001 Yao Zhang 0010 Yifan Zhang Guangquan ZhouGuang-Quan Zhou Yuyin Zhou Susu M. Zughaier