Harnessing Collective Intelligence of LLMs for Robust Biomedical QA: A Multi-Model Approach - Dimitra N. Panou; Alexandros C. Dimopoulos; Manolis Koubarakis; Martin Reczko (Working Notes of the Conference and Labs of the Evaluation Forum, CLEF 2025, Madrid, Spain, 9-12 September 2025, 2025)

Harnessing Collective Intelligence of LLMs for Robust Biomedical QA: A Multi-Model Approach - Dimitra N. Panou; Alexandros C. Dimopoulos; Manolis Koubarakis; Martin Reczko (CoRR, 2025)

Farming Open LLMs for Biomedical Question Answering - Dimitra N. Panou; Alexandros C. Dimopoulos; Martin Reczko (Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2024), Grenoble, France, 9-12 September, 2024, 2024)

Semi-supervised training for biomedical question answering - Dimitra N. Panou; Martin Reczko (Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2023), Thessaloniki, Greece, September 18th to 21st, 2023, 2023)

ELECTROLBERT: Combining Replaced Token Detection and Sentence Order Prediction - Martin Reczko (Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to - 8th, 2022, 2022)

SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines - Thanasis Vergoulis; Konstantinos Zagganas; Loukas Kavouras; Martin Reczko; Stelios Sartzetakis; Theodore Dalamagas (SSDBM 2021: 33rd International Conference on Scientific and Statistical Database Management, Tampa, FL, USA, July 6-7, 2021, 2021)

SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines - Thanasis Vergoulis; Konstantinos Zagganas; Loukas Kavouras; Martin Reczko; Stelios Sartzetakis; Theodore Dalamagas (CoRR, 2021)

DeepFoldit - A Deep Reinforcement Learning Neural Network Folding Proteins - Dimitra N. Panou; Martin Reczko (CoRR, 2020)

The future of metabolomics in ELIXIR - Merlijn N. van Rijswijk; Charlie Beirnaert; Christophe Caron; Marta Cascante; Victoria Dominguez Del Angel; Warwick B. Dunn; Timothy M. D. Ebbels; Franck Giacomoni; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; Jose L. Izquierdo-García; et al. (F1000Research, 2017)

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs - Maria D. Paraskevopoulou; Georgios K. Georgakilas; Nikos Kostoulas; Martin Reczko; Manolis Maragkakis; Theodore M. Dalamagas; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2013)

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows - Maria D. Paraskevopoulou; Georgios K. Georgakilas; Nikos Kostoulas; Ioannis S. Vlachos; Thanasis Vergoulis; Martin Reczko; Christos Filippidis; Theodore Dalamagas; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2013)

Functional microRNA targets in protein coding sequences - Martin Reczko; Manolis Maragkakis; Panagiotis Alexiou; Ivo Grosse; Artemis G. Hatzigeorgiou (Bioinform., 2012)

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support - Thanasis Vergoulis; Ioannis S. Vlachos; Panagiotis Alexiou; George Georgakilas; Manolis Maragkakis; Martin Reczko; Stefanos Gerangelos; Nectarios Koziris; Theodore Dalamagas; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways - Ioannis S. Vlachos; Nikos Kostoulas; Thanasis Vergoulis; Georgios K. Georgakilas; Martin Reczko; Manolis Maragkakis; Maria D. Paraskevopoulou; Kostantinos Prionidis; Theodore Dalamagas; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities - Eleftheria Tzamali; Panayiota Poirazi; Ioannis G. Tollis; Martin Reczko (BMC Syst. Biol., 2011)

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association - Manolis Maragkakis; Thanasis Vergoulis; Panagiotis Alexiou; Martin Reczko; Kyriaki Plomaritou; Mixail Gousis; Kornilios Kourtis; Nectarios Koziris; Theodore Dalamagas; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2011)

Encoding of Spatio-Temporal Input Characteristics by a CA1 Pyramidal Neuron Model - Eleftheria Kyriaki Pissadaki; Kyriaki Sidiropoulou; Martin Reczko; Panayiota Poirazi (PLoS Comput. Biol., 2010)

DIANA-mirPath: Integrating human and mouse microRNAs in pathways - Giorgos L. Papadopoulos; Panagiotis Alexiou; Manolis Maragkakis; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

Lost in translation: an assessment and perspective for computational microRNA target identification - Panagiotis Alexiou; Manolis Maragkakis; Giorgos L. Papadopoulos; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

Accurate microRNA target prediction correlates with protein repression levels - Manolis Maragkakis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Martin Reczko; Theodore Dalamagas; Giorgos Giannopoulos; George I. Goumas; Evangelos Koukis; Kornilios Kourtis; Victor A. Simossis; Praveen Sethupathy; Thanasis Vergoulis; et al. (BMC Bioinform., 2009)

The database of experimentally supported targets: a functional update of TarBase - Giorgos L. Papadopoulos; Martin Reczko; Victor A. Simossis; Praveen Sethupathy; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2009)

DIANA-microT web server: elucidating microRNA functions through target prediction - Manolis Maragkakis; Martin Reczko; Victor A. Simossis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Theodore Dalamagas; Giorgos Giannopoulos; Georgios I. Goumas; Evangelos Koukis; Kornilios Kourtis; Thanasis Vergoulis; Nectarios Koziris; et al. (Nucleic Acids Res., 2009)

MicroRNAs and Cancer - The Search Begins! - Anastasis Oulas; Martin Reczko; Panayiota Poirazi (IEEE Trans. Inf. Technol. Biomed., 2009)

The benefit of cooperation: Identifying growth-efficient interacting strains of Escherichia coli using metabolic flux balance models - Eleftheria Tzamali; Martin Reczko (Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2008, October 8-10, 2008, Athens, Greece, 2008)

Bidirectional Long Short-Term Memory Networks for Predicting the Subcellular Localization of Eukaryotic Proteins - Trias Thireou; Martin Reczko (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

The Impact of Systems Biology on the Digital Patient - Martin Reczko; Panayiota Poirazi; Anastasis Oulas; Eleftheria Tzamali; Maria Manioudaki; Vassilis Tsiaras; Ioannis G. Tollis (ERCIM News, 2007)

Support Vector Machines for Predicting microRNA Hairpins - Karol Szafranski; Molly Megraw; Martin Reczko; Artemis G. Hatzigeorgiou (Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, BIOCOMP'06, Las Vegas, Nevada, USA, June 26-29, 2006, 2006)

Visualization of Functional Aspects of microRNA Regulatory Networks Using the Gene Ontology - Alkiviadis Symeonidis; Ioannis G. Tollis; Martin Reczko (Biological and Medical Data Analysis, 7th International Symposium, ISBMDA 2006, Thessaloniki, Greece, December 7-8, 2006, Proceedings, 2006)

Using Treemaps to Visualize Phylogenetic Trees - Adam Arvelakis; Martin Reczko; Alexandros Stamatakis; Alkiviadis Symeonidis; Ioannis G. Tollis (Biological and Medical Data Analysis, 6th International Symposium, ISBMDA 2005, Aveiro, Portugal, November 10-11, 2005, Proceedings, 2005)

Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks - Martin Reczko; Petko Fiziev; Eike Staub; Artemis G. Hatzigeorgiou (Algorithms in Bioinformatics, Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002, Proceedings, 2002)

DIANA-EST: a statistical analysis - Artemis G. Hatzigeorgiou; Petko Fiziev; Martin Reczko (Bioinform., 2001)

Improved MR image reconstruction from sparsely sampled scans based on neural networks - Martin Reczko; Dimitris A. Karras; Basil G. Mertzios; Danielle Graveron-Demilly; Dirk van Ormondt (Pattern Recognit. Lett., 2001)

Prediction of human transnational initiation sites using a multiple neural network approach - Christian Derst; Martin Reczko; Artemis G. Hatzigeorgiou (Int. J. Comput. Syst. Signals, 2000)

MR Image Reconstruction from Sparsely Sampled Scans Based on Multilayer Perceptrons and Using Regularization Techniques - Dimitris A. Karras; Martin Reczko; Basil G. Mertzios; Danielle Graveron-Demilly; Dirk van Ormondt (Proceedings of the IEEE-INNS-ENNS International Joint Conference on Neural Networks, IJCNN 2000, Neural Computing: New Challenges and Perspectives for the New Millennium, Como, Italy, July 24-27, 2000, Volume 1, 2000)

Feature recognition on expressed sequence tags of human DNA - Artemis G. Hatzigeorgiou; Martin Reczko (International Joint Conference Neural Networks, IJCNN 1999, Washington, DC, USA, July 10-16, 1999, 1999)

Protein Fold Class Prediction: New Methods of Statistical Classification - Janet Grassmann; Martin Reczko; Sándor Suhai; Lutz Edler (Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany, 1999)

Neural Networks in MR Image Estimation from Sparsely Sampled Scans - Martin Reczko; Dimitris A. Karras; V. Mertzios; Danielle Graveron-Demilly; Dirk van Ormondt (Machine Learning and Data Mining in Pattern Recognition, First International Workshop, MLDM'99, Leipzig, Germany, September 16-18, 1999, Proceedings, 1999)

An update of the DEF database of protein fold class predictions - Martin Reczko; Dimitris A. Karras; Henrik Bohr (Nucleic Acids Res., 1997)

Künstliche neuronale Netzwerke in der Molekularbiologie - Martin Reczko (Universität Stuttgart, 1996)

Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks - Niels Mache; Paul Levi; Artemis G. Hatzigeorgiou; Martin Reczko (Proceedings of the German Conference on Bioinformatics, GCB 1996, Leipzig, Germany, September 30 - October 2, 1996, 1996)

A parallel neural network simulator on the connection machine CM-5 - Martin Reczko; Artemis G. Hatzigeorgiou; Niels Mache; Andreas Zell; Sándor Suhai (Comput. Appl. Biosci., 1995)