Ancestry inference using reference labeled clusters of haplotypes.

Catherine A. Ball

Yong Wang 0075 Shiya Song Joshua G. Schraiber Alisa Sedghifar Jake K. Byrnes David A. Turissini Eurie L. Hong Catherine A. Ball Keith Noto Ancestry inference using reference labeled clusters of haplotypes. 459 2021 22 BMC Bioinform. 1 https://doi.org/10.1186/s12859-021-04350-x db/journals/bmcbi/bmcbi22.html#WangSSSBTHBN21

James C. Hu Gavin Sherlock Deborah A. Siegele Suzanne A. Aleksander Catherine A. Ball Janos Demeter Sushanth Gouni Timothy A. Holland Peter D. Karp John E. Lewis Nathan M. Liles Brenley K. McIntosh Huaiyu Mi Anushya Muruganujan Farrell Wymore Paul D. Thomas PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools. 677-684 2014 42 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkt1203 https://www.wikidata.org/entity/Q30703108 db/journals/nar/nar42.html#HuSSABDGHKLLMMMWT14

Ravi Shankar Helen E. Parkinson Tony Burdett Emma Hastings Junmin Liu Michael Miller 0001 Rashmi Srinivasa Joseph White Alvis Brazma Gavin Sherlock Christian J. Stoeckert Jr. Catherine A. Ball Annotare - a tool for annotating high-throughput biomedical investigations and resulting data. 2470-2471 2010 26 Bioinform. 19 https://doi.org/10.1093/bioinformatics/btq462 https://www.wikidata.org/entity/Q33669927 db/journals/bioinformatics/bioinformatics26.html#ShankarPBHLMSWBSSB10

T. B. K. Reddy Robert Riley 0002 Farrell Wymore Phillip Montgomery David DeCaprio Reinhard Engels Marcel Gellesch Jeremy Hubble Dennis Jen Heng Jin Michael Koehrsen Lisa Larson Maria Mao Michael Nitzberg Peter Sisk Christian Stolte Brian Weiner Jared White Zachariah K. Zachariah Gavin Sherlock James E. Galagan Catherine A. Ball Gary K. Schoolnik TB database: an integrated platform for tuberculosis research. 499-508 2009 37 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkn652 https://www.wikidata.org/entity/Q37202442 db/journals/nar/nar37.html#ReddyRWMDEGHJJKLMNSSWWZSGBS09

Jeremy Hubble Janos Demeter Heng Jin Maria Mao Michael Nitzberg T. B. K. Reddy Farrell Wymore Zachariah K. Zachariah Gavin Sherlock Catherine A. Ball Implementation of GenePattern within the Stanford Microarray Database. 898-901 2009 37 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkn786 https://www.wikidata.org/entity/Q37202682 db/journals/nar/nar37.html#HubbleDJMNRWZSB09

Donald Maier Farrell Wymore Gavin Sherlock Catherine A. Ball The XBabelPhish MAGE-ML and XML Translator. 2008 9 BMC Bioinform. https://doi.org/10.1186/1471-2105-9-28 https://www.wikidata.org/entity/Q33315467 db/journals/bmcbi/bmcbi9.html#MaierWSB08

Robert J. Marinelli Kelli Montgomery Chih Long Liu Nigam H. Shah Wijan Prapong Michael Nitzberg Zachariah K. Zachariah Gavin Sherlock Yasodha Natkunam Robert B. West Matt van de Rijn Patrick O. Brown Catherine A. Ball The Stanford Tissue Microarray Database. 871-877 2008 36 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkm861 https://www.wikidata.org/entity/Q33305327 db/journals/nar/nar36.html#MarinelliMLSPNZSNWRBB08

John Darrell Van Horn Catherine A. Ball Domain-Specific Data Sharing in Neuroscience: What Do We Have to Learn from Each Other? 117-121 2008 6 Neuroinformatics 2 https://doi.org/10.1007/s12021-008-9019-9 https://www.wikidata.org/entity/Q28730762 db/journals/ni/ni6.html#HornB08

Catherine Beauheim Farrell Wymore Michael Nitzberg Zachariah K. Zachariah Heng Jin Jesse H. Pate Skene Catherine A. Ball Gavin Sherlock OntologyWidget - a reusable, embeddable widget for easily locating ontology terms. 2007 8 BMC Bioinform. https://doi.org/10.1186/1471-2105-8-338 https://www.wikidata.org/entity/Q33298842 db/journals/bmcbi/bmcbi8.html#BeauheimWNZJSBS07

Janos Demeter Catherine Beauheim Jeremy Gollub Tina Hernandez-Boussard Heng Jin Donald Maier John C. Matese Michael Nitzberg Farrell Wymore Zachariah K. Zachariah Patrick O. Brown Gavin Sherlock Catherine A. Ball The Stanford Microarray Database: implementation of new analysis tools and open source release of software. 766-770 2007 35 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkl1019 https://www.wikidata.org/entity/Q33267232 db/journals/nar/nar35.html#DemeterBGHJMMNWZBSB07

Tim F. Rayner Philippe Rocca-Serra Paul T. Spellman Helen C. Causton Anna Farne Ele Holloway Rafael A. Irizarry Junmin Liu Donald Maier Michael Miller 0001 Kjell Petersen John Quackenbush Gavin Sherlock Christian J. Stoeckert Jr. Joseph White Patricia L. Whetzel Farrell Wymore Helen E. Parkinson Ugis Sarkans Catherine A. Ball Alvis Brazma A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. 489 2006 7 BMC Bioinform. https://doi.org/10.1186/1471-2105-7-489 https://www.wikidata.org/entity/Q24673513 db/journals/bmcbi/bmcbi7.html#RaynerRSCFHILMMPQSSWWWPSBB06

Catherine A. Ball Ihab A. B. Awad Janos Demeter Jeremy Gollub Joan M. Hebert Tina Hernandez-Boussard Heng Jin John C. Matese Michael Nitzberg Farrell Wymore Zachariah K. Zachariah Patrick O. Brown Gavin Sherlock The Stanford Microarray Database accommodates additional microarray platforms and data formats. 580-582 2005 33 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gki006 https://www.wikidata.org/entity/Q24792881 db/journals/nar/nar33.html#BallADGHHJMNWZBS05

Ihab A. B. Awad Christian A. Rees Tina Hernandez-Boussard Catherine A. Ball Gavin Sherlock Caryoscope: An Open Source Java application for viewing microarray data in a genomic context. 151 2004 5 BMC Bioinform. https://doi.org/10.1186/1471-2105-5-151 https://www.wikidata.org/entity/Q24794098 db/journals/bmcbi/bmcbi5.html#AwadRHBS04

Jeremy Gollub Catherine A. Ball Gail Binkley Janos Demeter David B. Finkelstein Joan M. Hebert Tina Hernandez-Boussard Heng Jin Miroslava Kaloper John C. Matese Mark Schroeder Patrick O. Brown David Botstein Gavin Sherlock The Stanford Microarray Database: data access and quality assessment tools. 94-96 2003 31 Nucleic Acids Res. 1 db/journals/nar/nar31.html#GollubBBDFHHJKMSBBS03 https://doi.org/10.1093/nar/gkg078 https://www.wikidata.org/entity/Q30760675

Catherine A. Ball Gavin Sherlock Helen E. Parkinson Philippe Rocca-Serra Catherine Brooksbank Helen C. Causton Duccio Cavalieri Terry Gaasterland Pascal Hingamp Frank C. P. Holstege Martin Ringwald Paul T. Spellman Christian J. Stoeckert Jr. Jason E. Stewart Ronald C. Taylor Alvis Brazma John Quackenbush An open letter to the scientific journals. 1409 2002 18 Bioinform. 11 db/journals/bioinformatics/bioinformatics18.html#BallSPRBCCGHHRSSSTBQ02 https://doi.org/10.1093/bioinformatics/18.11.1409 https://www.wikidata.org/entity/Q48274454

Selina S. Dwight Midori A. Harris Kara Dolinski Catherine A. Ball Gail Binkley Karen R. Christie Dianna G. Fisk Laurie Issel-Tarver Mark Schroeder Gavin Sherlock Anand Sethuraman Shuai Weng David Botstein J. Michael Cherry Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). 69-72 2002 30 Nucleic Acids Res. 1 db/journals/nar/nar30.html#DwightHDBBCFISSSWBC03 https://doi.org/10.1093/nar/30.1.69 https://www.wikidata.org/entity/Q24548440

Catherine A. Ball Heng Jin Gavin Sherlock Shuai Weng John C. Matese Rey Andrada Gail Binkley Kara Dolinski Selina S. Dwight Midori A. Harris Laurie Issel-Tarver Mark Schroeder David Botstein J. Michael Cherry Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. 80-81 2001 29 Nucleic Acids Res. 1 db/journals/nar/nar29.html#BallJSWMABDDHISBC01 https://doi.org/10.1093/nar/29.1.80 https://www.wikidata.org/entity/Q30621056

Gavin Sherlock Tina Hernandez-Boussard Andrew Kasarskis Gail Binkley John C. Matese Selina S. Dwight Miroslava Kaloper Shuai Weng Heng Jin Catherine A. Ball Michael B. Eisen Paul T. Spellman Patrick O. Brown David Botstein J. Michael Cherry The Stanford Microarray Database. 152-155 2001 29 Nucleic Acids Res. 1 db/journals/nar/nar29.html#SherlockHKBMDKWJBESBBC01 https://doi.org/10.1093/nar/29.1.152 https://www.wikidata.org/entity/Q38661591

Catherine A. Ball Kara Dolinski Selina S. Dwight Midori A. Harris Laurie Issel-Tarver Andrew Kasarskis Charles R. Scafe Gavin Sherlock Gail Binkley Heng Jin Miroslava Kaloper Sidney D. Orr Mark Schroeder Shuai Weng Yan Zhu 0002 David Botstein J. Michael Cherry Integrating functional genomic information into the Saccharomyces Genome Database. 77-80 2000 28 Nucleic Acids Res. 1 db/journals/nar/nar28.html#BallDDHIKSSBJKOSWZBC00 https://doi.org/10.1093/nar/28.1.77 https://www.wikidata.org/entity/Q33610808

Stephen A. Chervitz Erich T. Hester Catherine A. Ball Kara Dolinski Selina S. Dwight Midori A. Harris Gail Juvik Alice Malekian Shannon Roberts TaiYun Roe Charles R. Scafe Mark Schroeder Gavin Sherlock Shuai Weng Yan Zhu 0002 J. Michael Cherry David Botstein Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. 74-78 1999 27 Nucleic Acids Res. 1 db/journals/nar/nar27.html#ChervitzHBDDHJMRRSSSWZCB99 https://doi.org/10.1093/nar/27.1.74 https://www.wikidata.org/entity/Q30432178

J. Michael Cherry Caroline Adler Catherine A. Ball Stephen A. Chervitz Selina S. Dwight Erich T. Hester Yankai Jia Gail Juvik TaiYun Roe Mark Schroeder Shuai Weng David Botstein SGD: Saccharomyces Genome Database. 73-79 1998 26 Nucleic Acids Res. 1 db/journals/nar/nar26.html#CherryABCDHJJRSWB98 https://doi.org/10.1093/nar/26.1.73 https://www.wikidata.org/entity/Q29615402

Caroline Adler Suzanne A. Aleksander Rey Andrada Ihab A. B. Awad Catherine Beauheim Gail Binkley David Botstein Alvis Brazma Catherine Brooksbank Patrick O. Brown Tony Burdett Jake K. Byrnes Helen C. Causton Duccio Cavalieri J. Michael Cherry Stephen A. Chervitz Karen R. Christie Dave DeCaprioDavid DeCaprio Janos Demeter Kara Dolinski Selina S. Dwight Michael B. Eisen Reinhard Engels Anna Farne David B. Finkelstein Dianna G. Fisk Terry Gaasterland James E. Galagan Marcel Gellesch Jeremy Gollub Sushanth Gouni Midori A. Harris Emma Hastings Joan M. Hebert Tina Hernandez-Boussard Erich T. Hester Pascal Hingamp Timothy A. Holland Ele Holloway Frank C. P. Holstege Eurie L. Hong John D. Van HornJohn Darrell Van Horn James C. Hu Jeremy Hubble Rafael A. Irizarry Laurie Issel-Tarver Dennis Jen Yankai Jia Heng Jin Gail Juvik Miroslava Kaloper Peter D. Karp Andrew Kasarskis Michael Koehrsen Lisa Larson John E. Lewis Nathan M. Liles Chih Long Liu Junmin Liu Donald Maier Alice Malekian Maria Mao Robert J. Marinelli John C. Matese Brenley K. McIntosh Huaiyu Mi Michael Miller 0001 Kelli Montgomery Phillip Montgomery Anushya Muruganujan Yasodha Natkunam Michael Nitzberg Keith Noto Sidney D. Orr Helen E. Parkinson Kjell Petersen Wijan Prapong John Quackenbush Tim F. Rayner T. B. K. Reddy Christian A. Rees Matt van de Rijn Robert Riley 0002 Martin Ringwald Shannon Roberts Philippe Rocca-Serra TaiYun Roe Ugis Sarkans Charles R. Scafe Gary K. Schoolnik Joshua G. Schraiber Mark Schroeder Alisa Sedghifar Anand Sethuraman Nigam H. Shah Ravi Shankar Gavin Sherlock Deborah A. Siegele Peter Sisk Jesse H. Pate Skene Shiya Song Paul T. Spellman Rashmi Srinivasa Jason E. Stewart Christian J. Stoeckert Jr. Christian Stolte Ronald C. Taylor Paul D. Thomas David A. Turissini Yong Wang 0075 Brian Weiner Shuai Weng Robert B. West Patricia L. Whetzel Jared White Joseph White Farrell Wymore Zachariah K. Zachariah Yan Zhu 0002