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  1. SingleRust SingleRust Public

    Forked from SingleRust/SingleRust

    Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀

    Rust

  2. scverse/scanpy scverse/scanpy Public

    Single-cell analysis in Python. Scales to >100M cells.

    Python 2.5k 749

  3. scverse/rustar-aligner scverse/rustar-aligner Public

    A rust implementation of STAR

    Rust 49 4

  4. metal-linalg metal-linalg Public

    GPU linear-algebra factorizations (eigh/svd/qr/lstsq/pinv) on Apple Silicon via PyTorch-MPS custom Metal kernels. Drop-in torch.linalg patch.

    Python

  5. pipnn-scanpy pipnn-scanpy Public

    Fast graph-based nearest-neighbor indexing (PiPNN, arXiv:2602.21247) for single-cell / scanpy data

    Jupyter Notebook

  6. rustar-aligner rustar-aligner Public

    Forked from scverse/rustar-aligner

    A rust implementation of STAR

    Rust