Here are all custom codes/scripts for processing the data and generating the figures in:

BARTweb: a web server for transcriptional regulator association analysis

There is a README attached under each folder.

• Fig. 2A, figure2_compr_with_BART1.1/py1_compr_datasets_collection.py

• Fig. 2B, figure2_compr_with_BART1.1/py1_compr_tf_collection.py

• Fig. 4B, figure4_example/cdf_plot.py

• Fig. 4C, figure4_example/scatter_bart_pvalue.py

• Fig. 5A, figure5_knockTF_validation/manuscript_figs/py_coverage_of_datasets_percentage.py

• Fig. 5B, figure5_knockTF_validation/manuscript_figs/py_coverage_of_TF_percentage.py

• Fig. 5C, figure5_knockTF_validation/manuscript_figs/py_rela_rank_percentage_datasets.py

• Fig. 5D, figure5_knockTF_validation/manuscript_figs/py_rela_rank_percentage_TFs.py