A simplified approach to disulfide connectivity prediction from protein sequences (Q33314645)

25 July 2017

title

A simplified approach to disulfide connectivity prediction from protein sequences (English)

1 reference

25 July 2017

2

Andrea Passerini

1 reference

25 July 2017

Marc Vincent

1

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25 July 2017

Matthieu Labbé

series ordinal

3

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25 July 2017

Paolo Frasconi

series ordinal

4

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25 July 2017

publication date

14 January 2008

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25 July 2017

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25 July 2017

volume

9

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25 July 2017

page(s)

20

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Predicting disulfide connectivity patterns

25 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

DISULFIND: a disulfide bonding state and cysteine connectivity prediction server

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Disulfide connectivity prediction with 70% accuracy using two-level models

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Improving disulfide connectivity prediction with sequential distance between oxidized cysteines

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Prediction of disulfide connectivity from protein sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

SCRATCH: a protein structure and structural feature prediction server

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Cysteine separations profiles on protein sequences infer disulfide connectivity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Disulfide connectivity prediction using recursive neural networks and evolutionary information.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Predicting the disulfide bonding state of cysteines using protein descriptors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Prediction of disulfide connectivity in proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Predicting the oxidation state of cysteines by multiple sequence alignment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Enlarged representative set of protein structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Selection of representative protein data sets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matching

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Disulfide connectivity prediction using secondary structure information and diresidue frequencies

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Prediction of the disulfide-bonding state of cysteines in proteins based on dipeptide composition

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2375136

Different sequence environments of cysteines and half cystines in proteins. Application to predict disulfide forming residues

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18194539

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-20

1 reference

journals/bmcbi/VincentPLF08

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions publication ID

28 January 2021

0 references

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25 July 2017

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